Potts Model Visualized

Inspired by The Illustrated Transformer, this post unpacks the symbols behind a Potts Model and visualizes how its parameters help us understand the evolution of protein sequence and structure.

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Author's profile picture Tianyu Lu on Communication, Protein, and ML

Generative Enzymes Model

Adapting the CbAS algorithm to generate plastic degrading enzymes with information from structure.

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Author's profile picture Tianyu Lu on Research, Protein, and ML

Protein Structure Design

Walkthrough of how to use MaSIF to search for DNA mimicking proteins in the PDB.

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Author's profile picture Tianyu Lu on Research, Protein, and ML

Protein Design Lectures

The lectures on protein design below are part of a summer workshop series on synthetic biology organized by he Canadian Synthetic Biology Education Research Group CSBERG.

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Author's profile picture Tianyu Lu on Teaching, Protein, and ML

Optimizing Plastic Degrading Proteins

We present a generalizable and automated pipeline for protein design. Our model can be applied to the optimization of any protein class, even those with scarce data.

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Author's profile picture Tianyu Lu on iGEM, Protein, and ML